PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0234s00240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family YABBY
Protein Properties Length: 77aa    MW: 8291.8 Da    PI: 7.2064
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0234s00240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY86.38.7e-27664563
              YABBY  5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshl 63
                        ++e+vCyv+CnfCnt lavsvP +s++++vtvrCGhC++llsvn+  + q  ++++  
  Vradi0234s00240.1  6 MATERVCYVHCNFCNTTLAVSVPCSSMLTIVTVRCGHCANLLSVNMGASLQPFPSQETQ 64
                       679**********************************************9999999864 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.0E-27764IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MSMDMMATER VCYVHCNFCN TTLAVSVPCS SMLTIVTVRC GHCANLLSVN MGASLQPFPS  60
QETQQGTGII FKMQII*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0951272e-84BT095127.1 Soybean clone JCVI-FLGm-6F4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490394.15e-41PREDICTED: putative axial regulator YABBY 2
SwissprotQ8GW464e-23YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A0L9UND03e-41A0A0L9UND0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SH306e-41A0A0S3SH30_PHAAN; Uncharacterized protein
STRINGGLYMA12G31670.52e-38(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.22e-24YABBY family protein